Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 7030
Gene Symbol: TFE3
TFE3
0.020 GeneticVariation group BEFREE Somatic translocations of this X-linked gene cause papillary renal cell carcinoma in which nuclear accumulation of the TFE3 oncoprotein is one of the most significant histopathologic characteristics.Early this year, Villegas et al. identified missense mutations in a TFE3 domain required for cytoplasmic inactivation as potentially causal for a mosaic human developmental disorder. 31833172 2020
Entrez Id: 5290
Gene Symbol: PIK3CA
PIK3CA
0.020 Biomarker group BEFREE Mutations in the p85α regulatory subunit encoded by PIK3R1 can both activate PI3K through oncogenic truncations in the iSH2 domain, or inhibit PI3K through developmental disorder mutations in the cSH2 domain. 31831213 2020
Entrez Id: 5291
Gene Symbol: PIK3CB
PIK3CB
0.010 Biomarker group BEFREE Mutations in the p85α regulatory subunit encoded by PIK3R1 can both activate PI3K through oncogenic truncations in the iSH2 domain, or inhibit PI3K through developmental disorder mutations in the cSH2 domain. 31831213 2020
Entrez Id: 5293
Gene Symbol: PIK3CD
PIK3CD
0.010 Biomarker group BEFREE Mutations in the p85α regulatory subunit encoded by PIK3R1 can both activate PI3K through oncogenic truncations in the iSH2 domain, or inhibit PI3K through developmental disorder mutations in the cSH2 domain. 31831213 2020
Entrez Id: 5294
Gene Symbol: PIK3CG
PIK3CG
0.010 Biomarker group BEFREE Mutations in the p85α regulatory subunit encoded by PIK3R1 can both activate PI3K through oncogenic truncations in the iSH2 domain, or inhibit PI3K through developmental disorder mutations in the cSH2 domain. 31831213 2020
Entrez Id: 1387
Gene Symbol: CREBBP
CREBBP
0.050 GeneticVariation group BEFREE Germline mutations within the CBP gene are known to cause Rubinstein-Taybi syndrome (RSTS), a developmental disorder characterized by intellectual disability, specific facial features and physical anomalies. 31806049 2019
Entrez Id: 1977
Gene Symbol: EIF4E
EIF4E
0.020 GeneticVariation group BEFREE Germline mutations within the CBP gene are known to cause Rubinstein-Taybi syndrome (RSTS), a developmental disorder characterized by intellectual disability, specific facial features and physical anomalies. 31806049 2019
Entrez Id: 5956
Gene Symbol: OPN1LW
OPN1LW
0.020 GeneticVariation group BEFREE Germline mutations within the CBP gene are known to cause Rubinstein-Taybi syndrome (RSTS), a developmental disorder characterized by intellectual disability, specific facial features and physical anomalies. 31806049 2019
Entrez Id: 57060
Gene Symbol: PCBP4
PCBP4
0.020 GeneticVariation group BEFREE Germline mutations within the CBP gene are known to cause Rubinstein-Taybi syndrome (RSTS), a developmental disorder characterized by intellectual disability, specific facial features and physical anomalies. 31806049 2019
Entrez Id: 55824
Gene Symbol: PAG1
PAG1
0.020 GeneticVariation group BEFREE Germline mutations within the CBP gene are known to cause Rubinstein-Taybi syndrome (RSTS), a developmental disorder characterized by intellectual disability, specific facial features and physical anomalies. 31806049 2019
Entrez Id: 7025
Gene Symbol: NR2F1
NR2F1
0.010 GeneticVariation group BEFREE Alterations in NR2F1 cause Bosch-Boonstra-Schaaf optic atrophy syndrome (BBSOAS), a recently described autosomal dominant disorder characterized by intellectual and developmental disabilities and optic atrophy. 31729143 2020
Entrez Id: 22983
Gene Symbol: MAST1
MAST1
0.010 Biomarker group BEFREE Evaluating the Role of MAST1 as an Intellectual Disability Disease Gene: Identification of a Novel De Novo Variant in a Patient with Developmental Disabilities. 31721002 2020
Entrez Id: 5080
Gene Symbol: PAX6
PAX6
0.040 GeneticVariation group BEFREE We screened PAX6 in 372 individuals with bilateral microphthalmia, anophthalmia, or coloboma (MAC) from the Medical Research Council Human Genetics Unit eye malformation cohort (HGU<sup>eye</sup>) and reviewed data from the Deciphering Developmental Disorders study. 31700164 2020
Entrez Id: 51780
Gene Symbol: KDM3B
KDM3B
0.010 GeneticVariation group BEFREE We also identify a deletion overlapping KDM3B and a duplication overlapping MAP3K4 and AGPAT4, both overlapping variants previously reported in developmental disorders. 31694657 2019
Entrez Id: 56895
Gene Symbol: AGPAT4
AGPAT4
0.010 GeneticVariation group BEFREE We also identify a deletion overlapping KDM3B and a duplication overlapping MAP3K4 and AGPAT4, both overlapping variants previously reported in developmental disorders. 31694657 2019
Entrez Id: 2294
Gene Symbol: FOXF1
FOXF1
0.040 Biomarker group BEFREE Haploinsufficiency of FOXF1 causes alveolar capillary dysplasia with misalignment of pulmonary veins (ACDMPV), a lethal neonatal lung developmental disorder. 31686214 2019
Entrez Id: 119587
Gene Symbol: CPXM2
CPXM2
0.010 Biomarker group BEFREE Carboxypeptidase X, M14 family member 2 (CPXM2), has been associated with several human developmental disorders. 31651348 2019
Entrez Id: 1788
Gene Symbol: DNMT3A
DNMT3A
0.010 AlteredExpression group BEFREE DNMT3A activity is essential for normal development, and its dysfunction has been linked to developmental disorders and cancer. 31582562 2019
Entrez Id: 166752
Gene Symbol: FREM3
FREM3
0.010 Biomarker group BEFREE However, it remains unknown whether genetic dysfunction of FREM3 also causes Fraser syndrome or another developmental disorder. 31554749 2020
Entrez Id: 4204
Gene Symbol: MECP2
MECP2
0.380 GeneticVariation group BEFREE Rett syndrome (RTT) is one of the most common causes of intellectual and developmental disabilities in girls, and is caused by mutations in the gene encoding methyl-CpG binding protein 2 (MECP2). 31542590 2019
Entrez Id: 55627
Gene Symbol: SMPD4
SMPD4
0.010 Biomarker group BEFREE Loss of SMPD4 Causes a Developmental Disorder Characterized by Microcephaly and Congenital Arthrogryposis. 31495489 2019
Entrez Id: 10847
Gene Symbol: SRCAP
SRCAP
0.010 GeneticVariation group BEFREE The developmental disorder Floating-Harbor syndrome (FHS) is caused by heterozygous truncating mutations in SRCAP, a gene encoding a chromatin remodeler mediating incorporation of histone variant H2A.Z. 31491386 2019
Entrez Id: 84706
Gene Symbol: GPT2
GPT2
0.010 GeneticVariation group BEFREE GPT2 mutations in autosomal recessive developmental disability: extending the clinical phenotype and population prevalence estimates. 31471722 2019
Entrez Id: 8621
Gene Symbol: CDK13
CDK13
0.010 Biomarker group BEFREE Mouse Model of Congenital Heart Defects, Dysmorphic Facial Features and Intellectual Developmental Disorders as a Result of Non-functional CDK13. 31440507 2019
Entrez Id: 8626
Gene Symbol: TP63
TP63
0.050 GeneticVariation group BEFREE Mutations in transcription factor p63 are associated with developmental disorders that manifest defects in stratified epithelia including the epidermis. 31413199 2019